Macvector aligning illumina reads to a reference sequence

MACVECTOR ALIGNING ILLUMINA READS TO A REFERENCE SEQUENCE INSTALL
MACVECTOR ALIGNING ILLUMINA READS TO A REFERENCE SEQUENCE SOFTWARE
MACVECTOR ALIGNING ILLUMINA READS TO A REFERENCE SEQUENCE SIMULATOR

IPA is currently licensed through June 2012.ДЄ large amount of software is installed on our cluster server.

Researchers can search the scientific literature and find insights most relevant to their experimental data analyze and build pathway models related to their experimental data and share and collaborate with colleagues.

INGENUITY PATHWAY ANALYSIS software that helps researchers model, analyze, and understand complex biological and chemical systems relevant to their experimental data.

MetaCore is based on a curated database of human protein-protein, protein-DNA interactions, transcription factors, signaling and metabolic pathways, disease and toxicity, and the effects of bioactive molecules. MetaCore, GeneGo's flapship product, is an integrated software suite for functional analysis of experimental data.

GeneGO Metacore GeneGo is a leading provider of data mining & analysis solutions in systems biology.

BKL is one of the best ways to quickly assess a vast set of protein properties for a given protein or set of proteins. BKL brings together curated data, analysis tools, and gene-centered information.

BioBASE The BIOBASE Knowledge Library (BKL) contains comprehensive sets of protein databases such as HumanPSD, WormPD, GPGR-PD, PombePD, and MycopathPD in addition to analysis tools such as TRANSFAC, TRANSPATH, and ExPlain.

Users are required to have data storage space on Rowley or BMC-PUB and may be required to purchase a queue on ROUS.ДЄdditional Resources Software from MIT Libraries The Galaxy Server acts as a separate head node for ROUS. To make things even easier, we have created a galaxy server here at MIT. For many users, the public Galaxy instance at Penn State can provide a very robust tool. You can analyze multiple alignments, compare genomic annotations, profile metagenomic samples and much much more.

MACVECTOR ALIGNING ILLUMINA READS TO A REFERENCE SEQUENCE INSTALL

Galaxy allows you to do analyses you cannot do anywhere else without the need to install or download anything. Galaxy is a bioinformatics platform that is designed to bring complicated informatics tools to bench scientists. Lasergene v8.0 A software package that provides sequence assembly including next-generation sequence analysis simplified primer design, and expanded SNP reporting and management.MacVector a comprehensive Macintosh application that provides sequence editing, primer design, internet database searching, protein analysis, sequence confirmation, multiple sequence alignment, phylogenetic reconstruction, coding region analysis, and a wide variety of other functions.Note that this software is on a different server.

MACVECTOR ALIGNING ILLUMINA READS TO A REFERENCE SEQUENCE SIMULATOR

Identical to the software used on the Tecan EVO 150s, the software contains a simulator that can be used to design your robotics experiments at your bench. Tecan EvoWare Standard This software is available as part of our robotics service.Roche LC480 Software for the Roche LightCyclers.Wafergen Software Software for analyzing Wafergen data.MATLAB A mathematical programming language used for mathematical modeling, as well as analyzing and visualizing data.Licenses for Spotfire are available through the BioMicro Center on a yearly basis. The BioMicro Center operates a Spotfire server that is available to anyone at MIT. It can handle a number of clustering functions and statistical tests and has very robust graphical capabilities. Spotfire is a widely used data analysis and visualization tool.SSH This software is what we recommend for UNIX access to rous and for downloading files from our servers.The software can be installed on your desktop to allow users to do additional analyses. Agilent 2100 Expert This software package is used to control the Agilent 2100 Bioanalyzer and to perform analysis of the output, including microfluidic and electrophoretic assays for RNA, DNA and proteins, as well as two-color flow cytometry.Below is a list of the software available: Desktop software is available from our Download Page.

Macvector aligning illumina reads to a reference sequence